AI-Assisted Microbiome Analysis

From microbiome data to an output you understand and can defend

Comparing two microbial communities

Question

How do community composition and diversity differ between two groups?

Work through a free example with synthetic microbiome data. You’ll compare which features are present and how abundant they are relative to one another, then examine diversity within each sample.

See the example results

Choose where to begin

If you want to…	Go to…
Understand the count, taxonomy, and sample metadata tables	Meet the data
Make sure the tables are ready for analysis	Check the inputs
Generate the figures and summary table	Run the analysis
Recalculate a result and explain what it means	Verify and explain
Share the results and their limitations	Export the report

First time running the code? Prepare your environment.

You define the question. AI can help you work through the analysis. You check the evidence and explain the result. How to use this guide.